VariMAT (Variation and Mutation Annotation Toolkit) is a web-based toolkit for the comprehensive annotation of human single nucleotide variations (SNVs) and short insertions/deletions (Indels). VariMAT utilizes different databases and public resources including UCSC, GENCODE, ENCODE, Ensembl, dbSNP, NCBI, HapMap, and the 1000 Genome Project for variant annotation. In addition, the tool also compares the variants with several published personal genomes and common variant databases.

 

Key functionalities:

  1. Reports Mutation summary in a tabular format
  2. Generated various distributions (Variant Filter, Quality, Read-depth, Allele change etc)
  3. Generates Pie chart and Bar chart of distributions
  4. Provides download option for selected fields from the result tables

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